Software

Phenix

model refinement and validation

Coot

manual model building

ChimeraX

Structure analysis and fancy figures

Chimera

Some people just never forgot the older version

PyMOL

Structure analysis (ask Jerry for license)

cryoSPARC

EM data processing

RELION

EM data processing

EMAN2

EM toolkit

SPIDER

legacy but useful

ColabFold

Where to run AlphaFold

Foldseek

Find your protein fold

DALI server

all-to-all structure  alignment

What we do

Use cryo-EM to understand and design large assemblies

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